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Molecular Dynamics Inc lammps software package
Lammps Software Package, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/software+package+lammps/dynamics+lammps+molecular+simulator/pm42300964-259-16-0
Average 86 stars, based on 1 article reviews
lammps software package - by Bioz Stars, 2026-09
86/100 stars

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Software:

Article Title: Motif-pattern dependence of biomolecular phase separation driven by specific interactions
Article Snippet: .. We wanted to test this result directly, so we performed molecular-dynamics (MD) simulations using the software package LAMMPS (see Molecular-dynamics methods below). ..

Article Title: Chromatin network retards nucleoli coalescence
Article Snippet: .. We used the software package LAMMPS to perform molecular dynamics (MD) simulations in reduced units. ..

Article Title: Local chemical inhomogeneity enables superior strength-ductility-superelasticity synergy in additively manufactured NiTi shape memory alloys
Article Snippet: .. Molecular dynamics (MD) simulations were performed using the software package LAMMPS within NPT ensemble. ..

Article Title: Compartmentalization with nuclear landmarks yields random, yet precise, genome organization.
Article Snippet: The 3D organization of eukaryotic genomes plays an important role in genome function.. While significant progress has been made in deciphering the folding mechanisms of individual chromosomes, the principles of the dynamic large-scale spatial arrangement of all chromosomes inside the nucleus are poorly understood.. We use polymer simulations to model the diploid human genome compartmentalization relative to nuclear bodies such as nuclear lamina, nucleoli, and speckles.

Article Title: Mixtures of discotic and spherical soft particles: de-mixing, liquid crystal behaviour and relative solubility
Article Snippet: Liquid crystals (LC) mixtures are ubiquitous in all real-life applications of LCs.. This is due to the need of modulating the macroscopic properties of the LC phase used in specific devices.. However, mixing particles of different shapes, not to mention different strength of interaction, often results in de-mixing (phase separation) with the formation of one phase rich in one type of particles separated from the other phase.

other:

Article Title: Glass Transition and Structure of Organic Polymers from All-Atom Molecular Simulations
Article Snippet: Molecular dynamics simulations were performed using software package LAMMPS, version 29 Oct 2020.26 Among its functionalities, velocity Verlet integrator, Shake algorithm,27 particle−particle particle−mesh (PPPM) solver treating long-range electrostatic interactions,28 and the Nose−́Hoover thermostat and barostat29 (setting the relaxation times for the temperature and pressure control to 100 and 1000 fs, respectively), all as https://doi.org/10.1021/acs.iecr.3c03038 Ind.

Article Title: Local chemical inhomogeneity enables superior strength-ductility-superelasticity synergy in additively manufactured NiTi shape memory alloys.
Article Snippet: Molecular dynamics (MD) simulations were performed using the software package LAMMPS53 within NPT ensemble.



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